Repository navigation
Conversation
…draft contract_model is the name of the function that corresponds to contractModel, and the table of return values states what it returns. The homology guide states what a template gene taken by an earlier template does under complexPolicy. The submodules point to the current develop of RAVEN and raven-toolbox, which define contract_model.
Documentation build overview
49 files changed ·
|
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
The Python function that corresponds to
contractModeliscontract_model(raven-toolbox#201). The pair list and the guide on combining models name it, and the table of return values states thatcontract_modelreturns the ids of the removed reactions andsimplify_modelreturnsNone.The guide to reconstruction from homology states what a template gene does that maps to a new gene which an earlier template already maps, under
preferredOrder(RAVEN#26, raven-toolbox#200): it counts as a missing subunit, andcomplexPolicydecides what happens to it.The submodules point to the current
developof RAVEN and raven-toolbox, which definecontract_model.