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@CompMetEng

Computational Metabolic Engineering @ Chalmers

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  1. raven-toolbox raven-toolbox Public

    Python port of the RAVEN Toolbox, built on cobrapy

    Python 9 1

  2. geckopy geckopy Public

    GECKO Toolbox for Python

    Python 3 2

  3. GECKO GECKO Public

    GECKO Toolbox for MATLAB, version 4+

    MATLAB 2

  4. study_overflow study_overflow Public

    Supplementary code and results from doi:10.1101/2020.02.20.957662

    Python 1

  5. RAVEN RAVEN Public

    RAVEN Toolbox for MATLAB, version 3+

    MATLAB 1

  6. haecon-GEM haecon-GEM Public

    Genome-scale model of Haemonchus contortus

    Jupyter Notebook

Repositories

Showing 10 of 12 repositories
  • raven-gecko-parity Public

    Keeps the MATLAB and Python implementations of RAVEN and GECKO honest about their differences: parity ledgers plus cross-implementation behaviour scenarios.

    CompMetEng/raven-gecko-parity's past year of commit activity
    Python 0 MIT 0 12 2 Updated Nov 8, 2026
  • gecko-docs Public

    Protocol for GECKO (both MATLAB and Python)

    CompMetEng/gecko-docs's past year of commit activity
    Python 0 0 1 1 Updated Nov 8, 2026
  • geckopy Public

    GECKO Toolbox for Python

    CompMetEng/geckopy's past year of commit activity
    Python 3 2 2 1 Updated Nov 8, 2026
  • GECKO Public

    GECKO Toolbox for MATLAB, version 4+

    CompMetEng/GECKO's past year of commit activity
    MATLAB 2 MIT 0 4 1 Updated Nov 8, 2026
  • raven-docs Public

    Documentation for RAVEN (MATLAB and Python)

    CompMetEng/raven-docs's past year of commit activity
    Python 0 0 4 1 Updated Nov 8, 2026
  • toolbox-assets Public
    CompMetEng/toolbox-assets's past year of commit activity
    0 0 0 0 Updated Nov 8, 2026
  • raven-toolbox Public

    Python port of the RAVEN Toolbox, built on cobrapy

    CompMetEng/raven-toolbox's past year of commit activity
    Python 9 GPL-3.0 1 0 0 Updated Nov 8, 2026
  • RAVEN Public

    RAVEN Toolbox for MATLAB, version 3+

    CompMetEng/RAVEN's past year of commit activity
    MATLAB 1 GPL-3.0 0 0 1 Updated Nov 8, 2026
  • study_overflow Public

    Supplementary code and results from doi:10.1101/2020.02.20.957662

    CompMetEng/study_overflow's past year of commit activity
    Python 1 0 0 1 Updated Oct 28, 2026
  • SuppOrth Public

    Pipeline to create support for orthologues prediction

    CompMetEng/SuppOrth's past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 24, 2026
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