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Describe the drop policy and correct the maintainer pages - #124

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Nov 8, 2026
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edkerk merged 5 commits into
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@edkerk edkerk commented Nov 5, 2026 •

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The guide to reconstruction from homology states that the policy drop removes each complex with a missing subunit and removes the reaction when no complex remains. The text follows RAVEN#25 and the matching change in raven-toolbox, and it merges after both.

The page Update the binary bundles names the bundled executables, the platforms that build_binary_bundles.py builds, the file that records the provenance, the entry of HMMER 3.3.2 for Windows, and the edits that a new version or a new tool needs. The page Update the KEGG assets gives the arguments of the check functions and says that RAVEN reads the manifest once per session. The paragraphs on the ecModel YAML name the readers of the empty enzymes forms and of double-quoted values, and state that the upgrade of a GECKO 3 model is in memory.

The policy drop removes each complex with a missing subunit and the reaction when no complex remains.
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read-the-docs-community Bot commented Nov 5, 2026 •

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The binaries page names the bundled executables, the platforms that build_binary_bundles.py builds, the files that record the provenance, and the edits that a new version or a new tool needs. The KEGG page gives the arguments of the check functions and says that RAVEN reads the manifest once per session. The YAML paragraphs name the readers and state that the upgrade is in memory.
@edkerk edkerk changed the title Describe the drop policy of the homology draft per complex Describe the drop policy and correct the maintainer pages Nov 6, 2026
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edkerk merged commit 441fad6 into develop Nov 8, 2026
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edkerk deleted the docs/homology-drop branch November 8, 2026 11:35
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