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Guide: measured zeros and the isozyme coverage functions - #35

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@edkerk edkerk commented Nov 3, 2026

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Documents ec.concs entries of NaN (not measured) and 0 (measured absent), the option zerosAsMeasured (Python: zeros_as_measured) of loadProtData, the functions getIsozymeCoverage and zeroUnmeasuredIsozymes (Python: get_isozyme_coverage, zero_unmeasured_isozymes), and how flexibilizeEnzConcs and relaxProteomicsGreedy treat a measured 0. The count of a complex in flexibilizeEnzConcs is recorded on its first subunit with a concentration above 0. Applies to GECKO and geckopy after the release that contains GECKO#30 and geckopy#86.

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📚 gecko-docs | 🛠️ Build #35624438 | 📁 Comparing bd58038 against latest (2269b27)

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edkerk changed the base branch from main to develop November 3, 2026 20:58
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edkerk merged commit 12215d5 into develop Nov 6, 2026
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edkerk deleted the docs/measured-zeros-isozymes branch November 6, 2026 17:44
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