ngff

Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.

A napari plugin for zarr backed OME-NGFF images

A minimal Python package for reading, writing and validating OME-Zarr (meta)data

A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processing and multi-dimensional concatenation.

KiCad Library for m.2 NGFF card

Browse, share, and publish OME-Zarr data

Unified API for streaming camera frames to either OME-TIFF or OME-Zarr format

Advanced methods in bioimage analysis

WIP: Conformance test cases and tools for OME-Zarr

Document available viewers and other tools for the OME-NGFF image format

System that allows automatic importing of datasets via local network

Run encapsulated docker containers with BioFormats2Raw in the Amazon Web Services infrastructure.

Course materials for the practical on the Defragmentation Training School 2 - Porto, 8-12 May 2023

People that have contributed to OME-Zarr at some point

Present TIFF files as a zarrita.js Zarr store following the NGFF OME-Zarr data model

Training website for the OME-Zarr format and the tooling around it.

A catalog of all public OME-NGFF representative samples derived from IDR data