Software platform for clinical neuroimaging studies
FOD-Net: A Deep Learning Method for Fiber Orientation Distribution Angular Super Resolution
MRtrix3Tissue adds capabilities for 3-Tissue CSD modelling and analysis to a complete version of MRtrix3.
Quantitative MRI toolbox in Python
Rapid, easy, atlas-based white matter tract segmentation
The basic structural and diffusion MRI registration with pre-processing pipeline in Python.
Code to create structural connectivity matrix from preprocessed DWI and structural MRI data.
Diffusion-MRI structural connectome pipeline (MRtrix3, FSL, FreeSurfer): MSMT-CSD, ACT tractography, SIFT2, Desikan/Destrieux parcellation. Used in Lumaca et al. (2024), Nature Communications, and in Lumaca et al. (2026), Imaging Neuroscience.
Docker image that provides a Ubuntu 16.04 (Xenial) with all CMP pre-requisite software installed
Single-subject diffusion MRI workflow with MRtrix3 and FSL: DTI, CSD, probabilistic tractography, SIFT, and quantitative QC.
Python toolbox that aims the uncertainty quantification in diffusion-MRI tractography.
MesoConnect is a human 7T diffusion tractography atlas of seven bilateral mesolimbic pathways, with overlap-proportion and 50% consensus maps, subject counts, an annotated FSL/MRtrix3 tutorial, and a reproducible atlas-guided tractography workflow.
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