longread

WYSIWYG block editor jQuery plugin.

Rust bindings to minimap2 library

A fast aligner for long DNA and RNA reads.

STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed specifically for long-read sequencing reads such as from Oxford nanopore technology (ONT) and PacBio.

Parallel String Graph Construction, Transitive Reduction, and Contig Generation for De Novo Genome Assembly

An analysis pipeline for Nanopore direct-RNA sequencing

10X single cell Nanopore reads simulation workflow. Complete documentation avialable at: https://GenomiqueENS.github.io/AsaruSim/

A collection of plots for long read sequencing FastQ files from devices like Oxford Nanopore's MinION and PromethION.

Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes

iSofOrmS annoTAtoR pipeline Aucouturier, C., Soirat, N., Castéra, L. et al. Fine mapping of RNA isoform diversity using an innovative targeted long-read RNA sequencing protocol with novel dedicated bioinformatics pipeline. BMC Genomics 25, 909 (2024).

Nextflow Pipeline for Strain Resolution from Long Reads

Benchmarking SV detection across GRCh38, T2T-CHM13, and HPRC pangenome graph references using short-read and long-read WGS.

Интерактивный лонгрид об истории 10 поколений Mitsubishi Lancer Evolution. Командный учебный проект: динамическая генерация карточек, темизация через CSS Variables, плавная навигация.

The web genome viewer is live at https://icemduru.github.io/listeria_ro15_transcript/

Язык денег — лонгрид о финансах мебельного бизнеса: баланс, кредиторка, реальная прибыль

Identifying allele-specific isoform expression with allspice🧂

Технический лонгрид в духе `what-happens-when` Алекса Гейнора, но про 1С. **Аудитория:** начинающие разработчики 1С и разработчики, переходящие с других платформ (Java, C#, Node.js). **Статус:** готовы части 0, I, II, III, IV. Части V–IX в разработке.

MuSTA: Multi-Sample Transcriptome Assembly for long-read isoform sequencing

🏭 article about Factory Records label