ipyrad

Here are 4 public repositories matching this topic...

edgardomortiz / paralog-finder

Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)

rad gbs radseq paralog ipyrad

Updated Sep 4, 2019
Python

edgardomortiz / fineRADstructure-tools

Star

Tools for data conversion and results visualization for fineRADstructure (http://cichlid.gurdon.cam.ac.uk/fineRADstructure.html)

structure haplotypes stacks gbs radseq pyrad ipyrad fineradstructure

Updated Mar 24, 2020
Python

NIGMS / Population-Genomics-and-Phylogenetics-with-RADseq

Star

This repository provides a comprehensive tutorial for phylogenetic analysis, covering data collection, sequence alignment, tree construction, and interpretation. It runs on AWS SageMaker using Jupyter notebooks and includes tools like MAFFT, Nextclade, and IQ-TREE.

python bioinformatics gcp computational-biology phylogenetic-trees phylogenetics population-genetics high-throughput-sequencing genome-assembly r-programming radseq ipyrad ddrad-seq iqtree phylogenetic-inference

Updated Jun 6, 2025
Jupyter Notebook

camayal / alignment2hdf5

Star

A simple script to convert fasta and nexus alignments into HDF5 databases compatible with Superbpp, ipyrad and ipyrad analysis

converter ipyrad superbpp

Updated Oct 28, 2021
Python

Add this topic to your repo

To associate your repository with the ipyrad topic, visit your repo's landing page and select "manage topics."

Learn more