lorinanthony / MAPIT Star 20 Code Issues Pull requests Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT) gwas genetics linear-mixed-models epistasis variance-components heritability epistasis-analysis gwas-tools gwas-case-control Updated Nov 29, 2022 C++
Sudaraka88 / LDWeaver Star 15 Code Issues Pull requests Discussions Genomewide Epistasis Analysis on Bacteria bioinformatics linkage-disequilibrium microbial-genomics epistasis-analysis bacterial-genome-analysis Updated Aug 7, 2026 R
lcrawlab / mvMAPIT Star 14 Code Issues Pull requests The multivariate MArginal ePIstasis Test cran gwas r cpp linear-mixed-models epistasis variance-components epistasis-analysis gwas-tools mapit mvmapit Updated Feb 20, 2026 R
colbyford / parEBEN Star 6 Code Issues Pull requests Parallel Implementations of the Empirical Bayesian Elastic Net Cross-Validation in R algorithm r genomics parallel cross-validation regularization bayesian-inference regression-models epistasis epistasis-analysis qtl-mapping elastic-nets Updated Aug 9, 2022 C
lcrawlab / sme Star 4 Code Issues Pull requests A fast and scalable method to detect epistasis in complex traits from biobank-scale studies cran gwas r cpp genetics epistasis epistasis-analysis gwas-tools epistatis mapit Updated Sep 16, 2026 C++
studentyaoshi / IACRC Star 3 Code Issues Pull requests epistasis-analysis chromatin-regulatroy-circuitry Updated Nov 14, 2017 Shell
wtaisner / genetic-programming Star 0 Code Issues Pull requests Estimating epistasis in trees for genetic programming problems genetic-programming epistasis epistasis-analysis Updated Jun 15, 2023 Jupyter Notebook
work-hard-play-harder / EpiML Star 0 Code Issues Pull requests machine-learning epistasis-analysis Updated Mar 20, 2019 JavaScript