cell-migration

A set of ImageJ plugins to quantify dynamics, morphology, and fluorescence of microglial cells.

Harness deep learning and bounding boxes to perform object detection, segmentation, tracking and more.

Analysis of cell migration in Igor Pro

Trajpy - empowering feature engineering for trajectory analysis across domains.

A Python package for analyzing XYZ positional data of moving objects over time

MigrationmineR is a R package to analyse and profile in vitro cell tracking and migration data. It is belongs to the cytominer-verse used for morphological profiling and allows to create temporal or dynamic profiles.

Automated tracking of cell migration in phase contrast microscope images

Metadata for curated CMSO datasets

Main CMSO website

Code corresponding to Marshall-Burghardt et.al., 2024, Science Advances.

Repository for the Minimum Information About Cell Migration Experiments

Proteolytic and non-proteolytic cell migration

PIV-based tools for measuring collective cell migration

Macrophages tracking using phagosight.

A Matlab pipeline for spatiotemporal quantification of monolayer cell migration. The repository includes Matlab source code. This repository is part of the book series "Neubias Bioimage Analysis". The analysis pipeline includes segmentation, velocity measurements, kymographs and multi-dimensional representations and PCA of wound healing assays.

Tool for semi-automatic tracking of migrating Dictyostelium cells from phase-contrast time-lapse image series

Active-matter simulations of collective migration in glioma cells: cell motility, shape changes, interactions, and collective observables.

Python pipeline for analyzing PIEZO1 protein localization and cell edge dynamics using fluorescence microscopy data.

Python - PyQt6 project to analyse fluorescence along a cell edge