GitHub Repository associated to the study of the evolutionary history and functional inference of the Oskar protein [ Extavour Lab, Harvard University ]
Interactive 3D structural viewer for DNA Polymerase epsilon (Pol e) catalytic subunit & Mutations
A rigorous machine learning classifier for GPCR targeting compounds.
An automated independent of sequence similarity tool for viral sequences identification using RNA-seq metagenomics small RNA reads
As a cell-free DNA (cfDNA) processing pipeline, Triton conducts fragmentomic and phased-nucleosome coverage analyses on individual or composite genomic regions and outputs both region-level biomarkers and nt-resolution signal profiles.
Predict fusion reading frames and retained, disrupted, or excluded functional protein features from transcript breakpoints.
A package for analyzing allele-specific expression in polyploid organisms
SARS-CoV-2 Clade identifier with SNP data using machine learning.
Comparing the effects of MDMA and Venlafaxine on Dark Agouti Rats
Independent reproduction of Duvallet et al. (2017), a 28-study gut-microbiome meta-analysis, plus a cross-study classifier and batch correction.
Forensic RNA-seq re-analysis of dataset GSE286438 to audit EGCG-mediated senescence reversal claims using PyDESeq2, PCA, correlation matrices, and biomarker validation.
Comparative machine learning study of ciprofloxacin resistance using bacterial genome-level features and multiple classification models.
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