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Pull requests: scverse/PyDESeq2

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Pull requests list

Chore(deps): bump astral-sh/setup-uv from 10.0.1 to 10.1.0 in the actions-deps group dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code
#469 opened Sep 20, 2026 by dependabot Bot Loading…
1
feat: add likelihood ratio test (LRT) to DeseqStats
#452 opened Jul 24, 2026 by pankev-in Loading…
1
1
Add tximport-style transcript-length normalization and pytximport support
#451 opened Jul 16, 2026 by gitbenlewis Loading…
2
4
[pre-commit.ci] pre-commit autoupdate
#449 opened Jun 15, 2026 by pre-commit-ci Bot Loading…
1
add cupy backend
#447 opened Apr 21, 2026 by Intron7 Member Loading…
Feature/gpu inference
#445 opened Apr 20, 2026 by maflot Loading…
4
jax deseq2
#441 opened Feb 25, 2026 by adamgayoso Member Loading…
5
Normalization factors and DESeqDataSetFromTximport equivalent
#412 opened Sep 13, 2025 by maltekuehl Collaborator • Draft
2
11
fix: improve the numerical stability of lfc_shrink
#370 opened Feb 28, 2025 by BorisMuzellec Collaborator • Draft
Add Relative Log Expression (RLE) Plots
#348 opened Dec 7, 2024 by jonathjd Loading…
8
ENH volcano plots
#317 opened Sep 20, 2024 by BorisMuzellec Collaborator Loading…
4
ENH implement local fit for trend curve
#234 opened Feb 2, 2024 by BorisMuzellec Collaborator • Draft
1
Adding an example with real data
#180 opened Oct 17, 2023 by jbschiratti • Draft
FEAT: Implement Likelihood-Ratio test
#178 opened Oct 17, 2023 by PABannier • Draft
1 of 2 tasks
1
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