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Saalfeld Lab

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  1. n5 n5 Public

    Not HDF5

    Java 211 24

  2. paintera paintera Public

    Kotlin 119 19

  3. render render Public

    Render transformed image tiles

    Java 37 35

  4. bigwarp bigwarp Public

    A tool for manual pointwise deformable registration using bigdataviewer.

    Java 37 14

  5. stitching-spark stitching-spark Public

    Reconstruct big images from overlapping tiled images on a Spark cluster.

    Java 34 11

  6. n5-zarr n5-zarr Public

    Zarr filesystem backend for N5

    Java 24 19

Repositories

Showing 10 of 117 repositories
  • render Public

    Render transformed image tiles

    saalfeldlab/render's past year of commit activity
    Java 37 GPL-2.0 35 29 1 Updated Oct 1, 2026
  • n5-aws-s3 Public

    N5 library implementation using Amazon Web Services S3 backend.

    saalfeldlab/n5-aws-s3's past year of commit activity
    Java 5 BSD-2-Clause 7 2 2 Updated Sep 30, 2026
  • paintera-conversion-helper Public

    Script to assist conversion of n5 datasets to paintera-friendly formats

    saalfeldlab/paintera-conversion-helper's past year of commit activity
    Kotlin 1 4 10 3 Updated Sep 29, 2026
  • flyvis-gnn Public

    GNN for fly visual system connectivity recovery with LLM-guided exploration

    saalfeldlab/flyvis-gnn's past year of commit activity
    Python 0 1 0 0 Updated Sep 26, 2026
  • paintera Public
    saalfeldlab/paintera's past year of commit activity
    Kotlin 119 GPL-2.0 19 79 (11 issues need help) 3 Updated Sep 24, 2026
  • bigwarp Public

    A tool for manual pointwise deformable registration using bigdataviewer.

    saalfeldlab/bigwarp's past year of commit activity
    Java 37 GPL-2.0 14 43 2 Updated Sep 23, 2026
  • sam-link Public

    Bridge between JVM applications and Segment Anything providers

    saalfeldlab/sam-link's past year of commit activity
    Kotlin 1 BSD-2-Clause 0 0 0 Updated Sep 23, 2026
  • n5-ij Public

    ImageJ convenience layer for N5

    saalfeldlab/n5-ij's past year of commit activity
    Java 21 BSD-2-Clause 14 31 (1 issue needs help) 2 Updated Sep 23, 2026
  • n5-universe Public

    Functionality shared across all n5

    saalfeldlab/n5-universe's past year of commit activity
    Java 2 BSD-2-Clause 6 6 4 Updated Sep 23, 2026
  • n5-viewer Public

    BigDataViewer-based tool for visualizing multichannel multiscale N5 datasets.

    saalfeldlab/n5-viewer's past year of commit activity
    Java 21 GPL-3.0 12 10 3 Updated Sep 23, 2026
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