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@prasathlab

Prasath Lab

Leveraging AI for Biomedical Informatics, Healthcare and Data Science

Hi there 👋

The Prasath Lab uses AI/Data Science Tools for Biomedical Informatics

We combine mathematics, computer science, and statistics to solve challenging biomedical informatics problems with special emphasis in pediatric domain. We use image processing, computer vision, machine and deep learning for large-scale biomedical imaging and multi-modal data. We do science that is collaborative and crosses disciplines. We follow a culture that is integrative and inclusive.

We are a group of young professionals aiming to develop computational tools for extracting insights from various biomedical data modalities. Our AI lab conducts leading interdisciplinary research in the fields of image processing, computer vision, and machine/deep learning for text, imaging, videos and multi-dimensional multi-modal data. Our team works together with clinicians, biologists, medical doctors with the common goal of accelerating data-driven discovery and facilitating bench-to-bedside translational science with special emphasize in the pediatrics domain. We are data modality-agnostic, discipline-agnostic, tools-agnostic and love challenges posed by messy real-world big-data. We are also fun-loving, but serious data-wranglers so please do not hesitate to contact if you would like to join us!

Contact

Surya Prasath, surya.prasath@cchmc.org

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  1. DeepImmuno DeepImmuno Public

    Forked from frankligy/DeepImmuno

    Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity

    Jupyter Notebook

  2. scTriangulate scTriangulate Public

    Forked from frankligy/scTriangulate

    scTriangulate is a Python package to mix-and-match conflicting clustering results in single cell analysis and generate reconciled clustering solutions

    Python

Repositories

Showing 10 of 16 repositories
  • BACE Public

    Biological Annotation-Guided KV Cache Eviction for Protein Language Models

    prasathlab/BACE's past year of commit activity
    0 MIT 0 0 0 Updated Aug 28, 2026
  • BOND Public Forked from Aronow-Lab/BOND

    Biomedical Ontology Normalization and Disambiguation

    prasathlab/BOND's past year of commit activity
    Python 0 MIT 1 0 0 Updated Aug 28, 2026
  • prasathlab-viz Public

    Prasath Lab Publications Visualization

    prasathlab/prasathlab-viz's past year of commit activity
    HTML 0 0 0 0 Updated Mar 12, 2026
  • PathAIData Public

    A curated list of publicly available histopathology datasets, accompanied by relevant metadata to facilitate research, analysis, and model development in pathology

    prasathlab/PathAIData's past year of commit activity
    1 1 0 0 Updated Mar 10, 2026
  • MELLMA Public
    prasathlab/MELLMA's past year of commit activity
    0 0 0 0 Updated Jan 9, 2026
  • scTriangulate Public Forked from frankligy/scTriangulate

    scTriangulate is a Python package to mix-and-match conflicting clustering results in single cell analysis and generate reconciled clustering solutions

    prasathlab/scTriangulate's past year of commit activity
    Python 0 MIT 6 0 0 Updated Oct 9, 2025
  • awesome-single-cell Public Forked from seandavi/awesome-single-cell

    Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

    prasathlab/awesome-single-cell's past year of commit activity
    0 MIT 1,107 0 0 Updated Aug 14, 2025
  • Hep2-Segmentation Public

    Benchmarking HEp-2 cell segmentation methods in indirect immunofluorescence images - Standard models to deep learning

    prasathlab/Hep2-Segmentation's past year of commit activity
    Python 1 Unlicense 0 0 0 Updated Apr 26, 2025
  • prasathlab/OCPS's past year of commit activity
    Python 0 1 0 0 Updated Feb 14, 2025
  • .github Public
    prasathlab/.github's past year of commit activity
    0 0 0 0 Updated Sep 22, 2023

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