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- lefs-cython-ring Public Forked from mirnylab/lefs-cython
A cython-based LEF translocator for fast 1D extrusion simulations
- microcompartments Public
Polymer simulations of compartments and extrusion modeling the mitosis-to-G1 transition
- bombyx2024 Public
- GenomeArchitectureAndFunction2023 Public
Materials for the workshop at Genome Architecture and Function 2023 Workshop
- heterochromatin-paper Public
- moving-barriers-paper Public
Simulation and analysis codes used in Banigan*, Tang*, van den Berg* et al. Transcription shapes 3D chromatin organization by interacting with loop-extruding cohesin complexes, bioRxiv (2021)
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