Issues

• Unexpected error while finalizing task 'collect_refs' - cause: Unknown variable 'outputDir'

  marbl/MetaCompass#31 · Filter by author freya0000 opened on Apr 28, 2026

• Error in Cluster step

  marbl/MetaCompass#29 · Filter by author wwood opened on Jul 19, 2025
  2

• Error in rule polish_contigs (ntHits?)

  marbl/MetaCompass#27 · Filter by author lxsteiner opened on Dec 18, 2023

• snakemake: error: argument **-T/--restart-times: expected one argument**

  marbl/MetaCompass#26 · Filter by author esraagithub opened on Apr 3, 2022
  3

• Error when running MetaCompass

  marbl/MetaCompass#25 · Filter by author bgmfddg opened on Mar 13, 2022
  1

• Could not open reference sequences file /refseq/markers/genome2markers.length

  marbl/MetaCompass#24 · Filter by author zhan4429 opened on Jan 16, 2022
  1

• Error --pilon polish contigs

  marbl/MetaCompass#23 · Filter by author GeonhoCho opened on Oct 18, 2021
  1

• Error in job reference_selection

  marbl/MetaCompass#21 · Filter by author AKBode opened on Sep 30, 2021
  2

• snakemake: error: unrecognized arguments: -T

  marbl/MetaCompass#20 · Filter by author TealFurnholm opened on Apr 17, 2021
  5

• Bowtie2 error

  marbl/MetaCompass#19 · Filter by author mredrejo opened on Feb 15, 2021

• Intallation problems (MacOS Catalina)

  marbl/MetaCompass#18 · Filter by author mredrejo opened on Feb 13, 2021

• one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode

  marbl/MetaCompass#17 · Filter by author MarcelaHer opened on Aug 7, 2020
  19

• Error when running MetaCompass

  marbl/MetaCompass#16 · Filter by author pbravakos opened on Aug 3, 2020
  4