Issues

• Uneven sampling ranges of hash values are dependent on data input.

  marbl/Mash#190 · Filter by author jmonroynieto opened on Jul 1, 2026

• computing percent divergence using mash

  marbl/Mash#189 · Filter by author sanyalab opened on Feb 5, 2026

• Sequence ID and Comment formatting breaks when using individual sequences (-i) flag

  marbl/Mash#188 · Filter by author OliverDietrich opened on Oct 13, 2025

• Parameters to calculate divergence between large genomes

  marbl/Mash#187 · Filter by author desmodus1984 opened on Sep 30, 2025

• Issue During Installation

  marbl/Mash#186 · Filter by author ojagan opened on Jun 20, 2025

• all-vs-all kmer sharing and mash distances for a set of proteins

  marbl/Mash#185 · Filter by author stubrown opened on Nov 26, 2024

• WARNING: The option p will be ignored with r.

  marbl/Mash#184 · Filter by author yanyew opened on Oct 18, 2024
  3

• The match is inconsistent with sketch size

  marbl/Mash#183 · Filter by author vvsbiocode opened on Jun 26, 2024

• Add brief description about what MASH does to the README.md

  marbl/Mash#182 · Filter by author diekhans opened on Dec 7, 2023

• Argument list too long

  marbl/Mash#179 · Filter by author Lil-5 opened on Sep 18, 2023
  2

• The release version of refseq.genomes.k21.s1000.msh

  marbl/Mash#177 · Filter by author guosongjia opened on Oct 7, 2022

• Explanation of the .msh format

  marbl/Mash#175 · Filter by author MBHallgren opened on Jul 19, 2022
  2

• MASH distance for AA

  marbl/Mash#174 · Filter by author jianshu93 opened on Jun 7, 2022
  1

• Doubts when using mash on multiple assemblies

  marbl/Mash#173 · Filter by author alanxelena opened on May 4, 2022
  1

• Can Mash accurately classify subspecies?

  marbl/Mash#172 · Filter by author rpalcab opened on Mar 30, 2022
  1

• -M for weighted kmer

  marbl/Mash#171 · Filter by author jianshu93 opened on Mar 23, 2022

• Cannot update Mash from version 1.1 to version 2

  marbl/Mash#170 · Filter by author juliadouglasf opened on Feb 17, 2022

• m1 ARM support?

  marbl/Mash#169 · Filter by author jianshu93 opened on Dec 22, 2021
  1

• Mash dist -p, wrong number of threads (bug?)

  marbl/Mash#168 · Filter by author d-golzato opened on Dec 1, 2021

• Missing include limits

  marbl/Mash#167 · Filter by author tillea opened on Oct 12, 2021

• Are Mash distances always symmetric?

  marbl/Mash#166 · Filter by author donovan-h-parks opened on Oct 2, 2021

• Inconsistent number of matching hashes

  marbl/Mash#165 · Filter by author durrantmm opened on Sep 21, 2021
  1

• Sketching paired- and single-end reads together

  marbl/Mash#164 · Filter by author VGalata opened on Aug 16, 2021

• output the containment sequence

  enhancement
  marbl/Mash#162 · Filter by author yywyaoyaowu opened on Aug 12, 2021
  3

• Update RefSeq?

  marbl/Mash#161 · Filter by author asaldivar93 opened on Jul 14, 2021
  3