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@khanlab

Khan Computational Imaging Lab

  • 29 followers
  • Robarts Research Institute, Western University, London, Canada

Popular repositories Loading

  1. hippunfold hippunfold Public

    BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)

    Python 70 24

  2. snakebids snakebids Public

    Snakemake + BIDS

    Python 24 15

  3. zarrnii zarrnii Public

    Package for working with OME-Zarr and NIFTI images in a unified manner, with a focus on spatial transformations

    Python 11 4

  4. tar2bids tar2bids Public

    Python 9 9

  5. SPIMquant SPIMquant Public

    SnakeBIDS app for quantitative analysis of SPIM (lightsheet) brain data

    Python 8 3

  6. mp2rage_genUniDen mp2rage_genUniDen Public

    Generates UNI-DEN image from UNI, Inv1 and Inv2 images

    MATLAB 7 1

Repositories

Showing 10 of 142 repositories
  • SPIMquant Public

    SnakeBIDS app for quantitative analysis of SPIM (lightsheet) brain data

    khanlab/SPIMquant's past year of commit activity
    Python 8 3 5 13 Updated Oct 20, 2026
  • FireANTs Public Forked from rohitrango/FireANTs

    Adaptive Riemannian Optimization for Multi-Scale Diffeomorphic Registration

    khanlab/FireANTs's past year of commit activity
    Python 0 40 0 2 Updated Oct 19, 2026
  • vesselFM Public Forked from bwittmann/vesselFM

    A foundation model for universal 3D blood vessel segmentation. Paper accepted @ CVPR25.

    khanlab/vesselFM's past year of commit activity
    Python 1 GPL-3.0 34 0 2 Updated Oct 19, 2026
  • zarrnii Public

    Package for working with OME-Zarr and NIFTI images in a unified manner, with a focus on spatial transformations

    khanlab/zarrnii's past year of commit activity
    Python 11 4 3 9 Updated Oct 19, 2026
  • khanlab-recipes Public

    rattler-build recipes for third-party packages published to the akhanf/khanlab prefix.dev channel

    khanlab/khanlab-recipes's past year of commit activity
    0 0 0 0 Updated Oct 19, 2026
  • hippunfold Public

    BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)

    khanlab/hippunfold's past year of commit activity
    Python 70 MIT 24 34 (1 issue needs help) 4 Updated Oct 15, 2026
  • cfmm2bids Public

    Snakemake workflow for pulling cfmm dicom server data into bids

    khanlab/cfmm2bids's past year of commit activity
    Python 3 1 3 3 Updated Oct 5, 2026
  • snakedwi Public
    khanlab/snakedwi's past year of commit activity
    Perl 2 MIT 8 1 1 Updated Oct 2, 2026
  • khanlab.github.io Public

    Khan Lab website

    khanlab/khanlab.github.io's past year of commit activity
    HTML 2 16 1 2 Updated Oct 1, 2026
  • actions Public

    Centralized repo of reusable GH actions

    khanlab/actions's past year of commit activity
    1 3 0 3 Updated Sep 28, 2026
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