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@hurwitzlab

Hurwitz Lab

Repository of the lab of Bonnie Hurwitz (UA)

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  1. elm-imicrobe-spa elm-imicrobe-spa Public

    Elm 10 4

  2. docker-mothur docker-mothur Public

    Docker image for running mothur.

    Makefile 4

  3. appetizer appetizer Public

    Create the app.json for Stampede

    Elm 4 1

  4. brc_hazel_training brc_hazel_training Public

    Repository to share the materials from the BRZ Hazel training with the attendees.

    JavaScript 4

  5. biosys-analytics biosys-analytics Public

    BE434/535 Biosystems Analytics

    Python 3 37

  6. planet-microbe-functional-annotation planet-microbe-functional-annotation Public

    Python 3

Repositories

Showing 10 of 267 repositories
  • nextflow_process_library Public

    Database of all the Hurwitz lab's Nextflow processes

    hurwitzlab/nextflow_process_library's past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Oct 29, 2026
  • bonphyre_pipelines Public

    Repository of the viral inference tool benchmark.

    hurwitzlab/bonphyre_pipelines's past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Oct 27, 2026
  • containerPy Public

    Build reproducible, version-pinned Python/conda (conda-forge + bioconda + PyPI) Apptainer images on Hazel from a package list

    hurwitzlab/containerPy's past year of commit activity
    Shell 0 MIT 0 0 0 Updated Oct 27, 2026
  • custom_containeR Public

    Build reproducible, version-pinned R Apptainer images on Hazel from a package list

    hurwitzlab/custom_containeR's past year of commit activity
    Shell 0 MIT 0 0 0 Updated Oct 27, 2026
  • hpc_viral_inference_pipeline Public

    This directory holds the trainings and associated scripts to run the viral pipeline from https://kbase.us/n/126189/27/

    hurwitzlab/hpc_viral_inference_pipeline's past year of commit activity
    JavaScript 1 MIT 0 0 0 Updated Oct 16, 2026
  • nextflow_crash_course Public
    hurwitzlab/nextflow_crash_course's past year of commit activity
    Nextflow 2 MIT 0 0 1 Updated Oct 5, 2026
  • brc_hazel_training Public

    Repository to share the materials from the BRZ Hazel training with the attendees.

    hurwitzlab/brc_hazel_training's past year of commit activity
    JavaScript 4 MIT 0 0 0 Updated Sep 1, 2026
  • bioinfo_bonanza_2026 Public

    Repository for the Bioinformatics Bonanza 2026 "Omics with R" sessions

    hurwitzlab/bioinfo_bonanza_2026's past year of commit activity
    0 MIT 0 0 0 Updated Sep 1, 2026
  • omics_with_R Public
    hurwitzlab/omics_with_R's past year of commit activity
    0 0 0 0 Updated Jul 29, 2026
  • ucd_bioinformaticscourse_2026 Public

    Materials for the bioinformatics summer course at UC Dublin, by Mery Touceda-Suarez

    hurwitzlab/ucd_bioinformaticscourse_2026's past year of commit activity
    HTML 1 MIT 0 0 0 Updated Jun 18, 2026
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