greninger-lab
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revica
revica PublicForked from asereewit/revica
A reference-based viral consensus genome assembly pipeline
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vadr-vscan-aglab
vadr-vscan-aglab PublicUse VADR v-scan to annotate HCoV, HMPV, HPIV, MeV, MuV or RuV sequences.
Shell 4
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pileup-hi
pileup-hi PublicForked from epiliper/pileup-hi
A high-throughput, extensible alignment pileup engine for the SAM and BAM formats
Rust 3
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Repositories
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This is a Nextflow DSL2 port of CtGAP v2.0, originally implemented as a Snakemake workflow by the D-Dean-Lab (https://github.com/D-Dean-Lab).
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Data and analysis code for evaluating a universal single-amplicon sequencing method for human rhinovirus and enterovirus genomes
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- picorna-strm Public
- RAVA_Pipeline Public
RAVA (Reference-based Analysis of Viral Alleles) is a Nextflow-based pipeline for non-longitudinal viral NGS data that generates interactive browser visualizations and aggregate mutation tables.
- pileup-hi Public Forked from epiliper/pileup-hi
A high-throughput, extensible alignment pileup engine for the SAM and BAM formats
- pileup-hi_paper Public
- rad_assembler Public
Nextflow pipeline for Reference Assisted De novo assembling whole genome shotgun sequenced viruses.
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