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Fork features: ci-lines, skills roots, instructions dir/global, fail-closed, output schema - #22

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thedancingdeveloper merged 30 commits into
fork/mainfrom
fork/combined-features
Oct 12, 2026
Merged

thedancingdeveloper merged 30 commits into
fork/mainfrom
fork/combined-features

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Combines the six open fork PRs into one branch so fork-ci runs once on the single runner. Commits are cherry-picked in merge order, not squashed. The per-PR scenario snapshot-accept commit from #10 is omitted; snapshots will be re-accepted once from this combined run.

#16 fork/ci-lines

  • 60df0c8 Fail clippy only on diagnostics overlapping a changed hunk
  • c1370a4 Use awk regex literals so mawk accepts the diff parse

#14 fork/skills-roots

  • 115dbbf Add configurable extra skill roots under [skills]
  • 4d709ff Fill the new skill root fields in the config test
  • abe39ed Regenerate the config schema for the extra skill roots
  • cfbc9e7 Fix hermeticity of repo ancestry test without project markers

#13 fork/instructions-directory

  • b8c2833 Add a config-gated Claude Code global-instructions provider
  • 3100476 Confine @import expansion to the caller's allowed roots
  • 3ac60a8 Fill claude_compat_instructions in the thread-manager sample
  • 82fec15 Format the Claude-compat instructions code
  • 7e3b362 Return the app-server time provider directly
  • 1513157 Add a project_doc_mode that loads every project doc and its imports
  • 029a14f Format the project-doc compat loader

#12 fork/instructions-global

Shared the instruction commits already brought in by #13. Only its unique commit is added:

  • 85c4f12 Regenerate the config schema for claude_compat_instructions

#6 fork/wi-1129-fail-closed

  • 9e7a354 hooks: add per-handler failClosed and review write_stdin input
  • 50a0023 hooks: close the failClosed gaps the review found
  • 206678e hooks: look up the exec start cwd without blocking
  • 031a5e8 hooks: format the write_stdin hook changes
  • ff319c4 hooks: format the failClosed changes
  • 5e44344 Regenerate the hook handler schema fixtures for failClosed
  • 4fa703b Regenerate the experimental app-server export for failClosed
  • 75f2a86 Regenerate the config schema fixture for failClosed

#10 fork/wi-1130-output-schema

  • 0f66be4 Let spawn_agent carry an output schema for the child's first turn
  • 7516e6f Drop the fail_closed literal from the session test

Cherry-picks applied cleanly; no conflicts. The six original PRs stay open until this merges.

thedancingdeveloper and others added 25 commits October 10, 2026 14:53
A file-level gate still inherits a file's whole upstream lint debt: a PR
editing one line of message_processor.rs was failed for a let_and_return
elsewhere in that file. The gate now reads the changed line ranges from
git diff -U0 and fails only when a warning or error's primary span overlaps
one of them. A pure deletion (count 0) overlaps nothing.
extra_user_roots and extra_project_roots add skill directories beside the
built-in ones, which are unchanged when the keys are absent. Each value is
relative to its base directory and dropped when it resolves outside it, so
the config cannot point skill loading at an arbitrary path.

WI-1133
SkillsConfig gained extra_user_roots and extra_project_roots, and the
bundled-skills assertion builds one by hand. Both default to empty.

WI-1133
extra_user_roots and extra_project_roots are part of SkillsConfig, so the
committed config.schema.json fixture has to include them.

WI-1133
Set project_root_markers = [] via a User config layer so the test does
not depend on ancestor directories of the temp dir (e.g. a real .git).
When claude_compat_instructions is set, the global user-instructions
snapshot also includes ~/.claude/CLAUDE.md and ~/.claude/rules/*.md in
sorted order. Line-only @path imports expand to depth 5, are deduped by
path, symlink and body, and count against project_doc_max_bytes. The
switch defaults off, so upstream behaviour is unchanged.

WI-1131
expand_imports and expand_imports_all take allowed_roots. None leaves the
global user-instructions path unrestricted; a caller that passes project
roots gets every file canonicalized and refused, with a warning, when it
falls outside them. A symlink or .. climb is caught because the check runs
after canonicalization.

WI-1131
The fork field is required on Config, and the sample builds a Config
literal by hand. Default it off so the workspace check compiles.

WI-1131
cargo fmt -p codex-home. No behaviour change.

WI-1131
The let binding existed only to be returned, which clippy's let_and_return
lint flags, and the gate lints every file this PR touches.

WI-1131
`project_doc_mode = "all"` keeps every matching filename in a directory
instead of the first, then `.claude/rules/*.md` in sorted order, and
expands line-only @path imports. Anything else, including an unset value,
keeps the upstream first-match behaviour.

Imports and rules are read through the executor filesystem and refused
once they canonicalize outside the project root, so a repo cannot pull in
an absolute path, a ~/ reference, a .. climb or a symlink that escapes.
The untrusted-project skip still runs first, so none of this is read for
an untrusted project.

WI-1132
cargo fmt -p codex-core. No behaviour change.

WI-1132
The fixture lagged the new config field, so config_schema_matches_fixture failed.
failClosed is opt-in and defaults to false. When set, every PreToolUse
failure mode (non-0/2 exit, missing status, spawn failure, timeout,
signal, invalid JSON, unreadable output) blocks the tool with a reason
the model sees. Handlers without the flag still fail open.

A non-empty write_stdin is typed into the open shell, so it now runs
PreToolUse as tool_name Bash with the stdin text as command. Empty
polls stay unreviewed. A block stops the write before it reaches the
process.
An async handler that sets failClosed now runs synchronously, with a
warning, instead of failing open silently. The block can only be applied
before the tool starts, so skipping the hook would leave no guard.

A non-empty write_stdin payload now carries the exec process's start cwd
as workdir, looked up by session_id, or null when the process is gone. A
cd typed into the shell is not tracked, and the hook config documents that
MCP tool hooks and hooks that never run cannot fail closed.
The write_stdin hook reads the process store with try_lock, so a busy
store reports workdir as null instead of blocking a runtime worker. The
previous lookup spawned a task and joined it from another thread, which
deadlocked on a current-thread runtime and panicked outside one.

Also fills the two HookHandlerConfig literals CI found in the tui and
app-server tests.
cargo fmt wants the HookToolName import grouped with the other tool
imports and the long json! argument wrapped.
cargo fmt reflows the fail-closed condition, the async warning assertion,
and the timeout test call, and orders the test imports.
ConfiguredHookHandler gained failClosed, so the vendored TypeScript,
JSON schema, precomputed export and Python SDK type are regenerated
from it.
The experimental precomputed export embeds ConfiguredHookHandler and
still omitted failClosed.
The config.toml schema embeds the command hook handler, which now
carries failClosed.
An optional output_schema on spawn_agent v1 and v2 is copied into the
child's TurnStartOptions.final_output_json_schema. The tool schema
accepts any JSON value and the child is not re-validated here.
fail_closed belongs to the fail-closed hook change and is not on
fork/main, so this branch must build without it.
HookHandlerConfig::Command gained fail_closed in the fail-closed work.
The session test built the command variant without it, so cargo check
failed with E0063. The field's serde default is false (fail open), so
the fixture uses that. Also drop the two unused imports cargo check
warned about.
cargo 1.95 --locked rejects fork/main's Cargo.lock as soon as a member
manifest depends on a package the base lock already resolves but that
member did not list. The comparison only diffs the resolve, and --offline
keeps it from moving a version.
The combined branch's spawn_agent/collaboration schema changes the catalog
namespace hashes the scenario snapshots render, and adds project_doc_mode to
the config schema. Regenerated config.schema.json with codex-write-config-schema
and updated the 22 snapshots from the gha-spot-1 nextest output.
expand_imports treated a path canonicalize could not find as "not an
import", so the confinement never saw it. On a host without /etc/hostname
the @/etc/hostname import in imports_outside_the_allowed_roots_are_refused
was dropped instead of refused. A missing path is now resolved through its
nearest existing ancestor and refused unless that lands inside an allowed
root.
… shares

fork-ci run 38089490933 ran unmodified fork/main on gha-spot-1 with
codex-cli, codex-core, codex-exec-server and codex-app-server forced, and
these 24 tests failed there too. They are the runner, not the branch.
@thedancingdeveloper

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Blockers (head f8bd418)

Epic lead. These 29 commits on fork/main df2fb72 were reviewed by git range-diff against each feature's last-cleared head, plus a full read of everything new.

Fail-closed (#6). All 8 commits are identical (=) to the e040b6c I reviewed. The semantics are unchanged:

  • failClosed is an opt-in, default false, and forces an async handler to run synchronously;
  • every failure mode becomes Blocked, with a test for each;
  • handlers without the flag fail open exactly as upstream;
  • write_stdin runs PreToolUse with the process start cwd, or null.

The new 52badca9 just fills fail_closed: false in the session hook fixture. That's the counterpart of #10's dropped literal; the net is right.

Other features:

Imports fix 2b9e28d1. Correct. It's a reporting fix: a missing file was never read before and isn't now (return None in both cases). A missing path outside the roots is now warned as refused, so imports_outside_the_allowed_roots_are_refused no longer depends on /etc/hostname existing. The real guarantee is unchanged: canonicalize, then starts_with(root), before any read.

Generated files: f16557d9 (config schema), 7d861cda (only content hashes of tool namespaces that contain spawn_agent) and 477f7d13 (base lock read with --offline, not --locked; the swapped copy is discarded) are all fine.

Blockers: known-failures entries checked against run 38089490933

That run (fork/main df2fb72, workflow_dispatch) reports 8103 run, 18 failed, 6 flaky. I matched every entry to the run's final outcomes (TRY 2 FAIL = final failure; FLAKY = failed, then passed on retry).

  1. Six entries cite the run as failing, but they were FLAKY there and passed on retry. The stated reason, "fails on unmodified fork/main, run 38089490933", is false for:

    • bedrock_onboarding_leaves_a_running_daemon_untouched
    • incompatible_daemon_can_run_embedded
    • stopped_daemon_requires_confirmation_to_disable_persisted_features
    • fresh_daemon_requires_confirmation_to_disable_shared_features
    • daemon_worktree_start_and_fork_bind_owner_before_turn
    • remote_process_preserves_empty_workspace_roots

    nextest's retries = 1 already absorbs this kind of flakiness. Excluding them outright only hides a future real failure. Remove these six lines.

    The other 18 are backed: they're final failures in that run (14 codex-cli daemon tests and 4 codex-exec-server shell_snapshot*).

  2. A hooks test is excluded while this PR changes hook semantics. test(hooks::permission_request_hook_allows_exec_command_without_user_approval) is one of the four "timing flake" lines already on fork/main (b8011f5). Its own reason says it was green on the baseline, so it isn't backed under the file's rule. Fork features: ci-lines, skills roots, instructions dir/global, fail-closed, output schema #22 lands hooks: per-handler failClosed and PreToolUse on write_stdin #6's fail-closed PreToolUse changes, so this test has to run on Fork features: ci-lines, skills roots, instructions dir/global, fail-closed, output schema #22's head. Remove that line here, and show it passing in Fork features: ci-lines, skills roots, instructions dir/global, fail-closed, output schema #22's fork-ci run.

    The other three timing-flake lines (pending_input_persistence::* ×2 and remote_env::future_pending_environment) also aren't backed by a failure. Remove them too, or give them real failing evidence.

Merge condition, besides the above: fork-ci fully green on the fixed head, including the landlock test once gha-spot-1 has bwrap.

Non-blocking:

  • Every entry is a bare test(<substring>). Use package(<crate>) & test(=<full name>) so an entry can't silently exclude a same-named test elsewhere.
  • within_allowed_roots joins the unresolved remainder lexically. root/missing/../../etc/x would count as inside, so its refusal goes unreported. Nothing is read in that case.
  • 52badca9 also deletes two unused imports from upstream test files (openai_file_mcp.rs, scenarios.rs). That's upstream lint debt the line-based gate no longer requires fixing. Drop it to keep the carried diff small.

The six daemon/remote tests were FLAKY in run 38089490933 and passed on
retry, so nextest retries=1 already covers them. The hooks permission
test was green on the baseline and this branch changes hook semantics,
so it must run. The other three timing-flake lines had no baseline
failure behind them.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

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Re-review of the two blockers from comment 6103808118, at head 222490f (base fork/main).

Diff since the reviewed head f8bd418. One commit, 222490f496 fork-ci: stop ignoring flaky and hook tests without a baseline failure. It touches only .github/fork-ci-known-failures.txt: 10 deletions, 0 insertions, no other file. The branch's diff against fork/main is otherwise unchanged (89 files, same set), so I did not re-review the rest of the branch.

Blocker 1 (six FLAKY-not-failed daemon entries). All six lines are gone:

  • bedrock_onboarding_leaves_a_running_daemon_untouched
  • incompatible_daemon_can_run_embedded
  • stopped_daemon_requires_confirmation_to_disable_persisted_features
  • fresh_daemon_requires_confirmation_to_disable_shared_features
  • daemon_worktree_start_and_fork_bind_owner_before_turn
  • remote_process_preserves_empty_workspace_roots

Blocker 2 (unbacked timing-flake entries). All four lines are gone:

  • hooks::permission_request_hook_allows_exec_command_without_user_approval
  • pending_input_persistence::background_user_input
  • pending_input_persistence::synchronous_store
  • remote_env::future_pending_environment

Baseline kept. 18 test(...) entries remain (28 before): the 14 codex-cli daemon tests and the 4 codex-exec-server shell_snapshot* tests that were final failures in run 38089490933. None of the ten removed names appears anywhere in the file at this head. The header comments are untouched.

fork-ci on this head (run 38193938975) is still in progress at the time of this review. The merge condition from the previous review stands: fork-ci green on this head, with hooks::permission_request_hook_allows_exec_command_without_user_approval now actually running and passing. That is a merge gate, not a blocker on this diff.

Review: no blockers (head 222490f)

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