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Sanyukta2002/README.md

💫 About Me:

Bioinformatician researching single-cell transcriptomics, metagenomics, and bulk RNA-seq. I build reproducible pipelines to help answer biological questions.

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  1. Cancer-nanoparticle-optimization Cancer-nanoparticle-optimization Public

    3D tumor spheroid simulation of nanoparticle drug delivery strategies using PhysiCell/pc4nanobio (C++)

    C++

  2. Differential-Abundance-Analysis Differential-Abundance-Analysis Public

    R

  3. ML-ibd ML-ibd Public

    Snakemake pipeline classifying IBD from gut microbiome composition across 4 independent cohorts. Tests for cohort-driven bias and validates every model with leave-one-cohort-out testinggeneralizes …

    R

  4. vaginal-microbiome-cst-vs-continuous vaginal-microbiome-cst-vs-continuous Public

    Comparing VALENCIA community state types with a continuous taxon-frequency model for preterm-birth signal in 2,179 public 16S samples (nf-core/ampliseq, DADA2, R.)

    R