Issues

• Handling bottlenecks with multiple active lineages in a host

  PoonLab/twt#185 · Filter by author ArtPoon opened on Oct 5, 2026

• Recombination between active lineages in a host

  PoonLab/twt#184 · Filter by author ArtPoon opened on Sep 21, 2026

• sim.arg error when rho is high

  PoonLab/twt#182 · Filter by author WongDWai opened on Aug 14, 2026
  2

  

• Simulating recombination

  PoonLab/twt#171 · Filter by author ArtPoon opened on Apr 10, 2026
  1

  

• Contemporaneous sampling

  enhancement
  PoonLab/twt#160 · Filter by author ArtPoon opened on Mar 4, 2026
  2

  

• Simulating intracellular pathogen

  PoonLab/twt#141 · Filter by author ekankaka opened on Nov 10, 2022

• Sampling a lineage multiple times

  PoonLab/twt#131 · Filter by author RouxCil opened on Feb 8, 2022
  14

  

• Update YAML specification documentation (wiki)

  PoonLab/twt#120 · Filter by author ArtPoon opened on Feb 10, 2020
  1

• Check user settings for expected number of events

  enhancement
  PoonLab/twt#114 · Filter by author ArtPoon opened on Jan 9, 2020

• Use data.table for EventLogger

  enhancement
  PoonLab/twt#113 · Filter by author ArtPoon opened on Jan 9, 2020
  1

• Implement time-heterogeneous rates for CompartmentTypes

  enhancement
  PoonLab/twt#89 · Filter by author ArtPoon opened on Nov 21, 2019
  5