Repository navigation

Add backup_nanopore for archiving Oxford Nanopore runs - #22

Open

scottdaniel wants to merge 7 commits into

Commits on Aug 26, 2026
- Add nanopore backup command
  
  scottdaniel
  and
  claude
  committed
  66849b1
- Preserve fastq_pass/<barcode>/ layout in nanopore archive
  
  scottdaniel
  and
  claude
  committed
  bda93c9
- Add optional --sample-sheet to backup_nanopore
  
  scottdaniel
  and
  claude
  committed
  fa8123b
- Make --sample-sheet required for backup_nanopore
  
  scottdaniel
  and
  claude
  committed
  937a369
Commits on Sep 15, 2026
- Concatenate all fastq_pass reads into one archived file
  
  scottdaniel
  and
  claude
  committed
  74c219e
- Don't return the archive Path from backup_nanopore's main()
  
  scottdaniel
  and
  claude
  committed
  904b511
- Move the exit-code fix to a separate cli() entry point
  
  scottdaniel
  and
  claude
  committed
  89ebd8a