chore: prepare official Meta-Radiology code release

.github/workflows/ci.yml

@@ -0,0 +1,33 @@
+name: CI
+
+on:
+  push:
+  pull_request:
+
+jobs:
+  test:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: "3.8"
+          cache: pip
+
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install torch==2.0.0 torchvision==0.15.1 --index-url https://download.pytorch.org/whl/cpu
+          pip install -r requirements-dev.txt
+
+      - name: Check Python syntax
+        run: python -m compileall -q .
+
+      - name: Check shell syntax
+        run: find jobs scripts -type f -name '*.sh' -print0 | xargs -0 -n1 bash -n
+
+      - name: Run tests
+        run: pytest -q

.gitignore

@@ -216,3 +216,31 @@ __marimo__/
 
 # Streamlit
 .streamlit/secrets.toml
+
+# macOS / editors
+.DS_Store
+Thumbs.db
+*.swp
+
+# Local datasets and generated research artifacts
+data/
+datasets/
+experiments/
+results/
+outputs/
+artifacts/
+revision_logs/
+runs/
+wandb/
+
+# Model, prediction, and perturbation artifacts
+*.ckpt
+*.pt
+*.pth
+*.pkl
+*.npz
+
+# Local tabular data and logs
+TableData/dataset/
+*.csv
+*.log

CITATION.cff

@@ -0,0 +1,45 @@
+cff-version: 1.2.0
+message: "If you use this software, please cite the DataCook paper."
+type: software
+title: "DataCook: Exploring Anti-Adversarial Fingerprints for Healthcare Data Usage Control"
+authors:
+  - family-names: Shang
+    given-names: Sihan
+  - family-names: Yan
+    given-names: Jun
+  - family-names: Shi
+    given-names: Danli
+  - family-names: Zheng
+    given-names: Haizhong
+  - family-names: Zheng
+    given-names: Shuangjia
+  - family-names: Zhao
+    given-names: Wei
+  - family-names: Yang
+    given-names: Jiancheng
+year: 2026
+license: Apache-2.0
+repository-code: "https://github.com/HINTLab/DataCook"
+url: "https://github.com/HINTLab/DataCook"
+preferred-citation:
+  type: article
+  title: "DataCook: Exploring Anti-Adversarial Fingerprints for Healthcare Data Usage Control"
+  authors:
+    - family-names: Shang
+      given-names: Sihan
+    - family-names: Yan
+      given-names: Jun
+    - family-names: Shi
+      given-names: Danli
+    - family-names: Zheng
+      given-names: Haizhong
+    - family-names: Zheng
+      given-names: Shuangjia
+    - family-names: Zhao
+      given-names: Wei
+    - family-names: Yang
+      given-names: Jiancheng
+  journal: Meta-Radiology
+  year: 2026
+  url: "https://arxiv.org/abs/2403.17755"
+  notes: "Accepted for publication; journal DOI pending."