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@BimberLab

Bimber Lab

Software created by the Bimber Lab of OHSU

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  1. DISCVRSeq DISCVRSeq Public

    A collection of command line tools for working with sequencing data

    HTML 52 16

  2. DiscvrLabKeyModules DiscvrLabKeyModules Public

    A collection of public LabKey modules developed by the Bimber Lab

    HTML 4 5

  3. cellhashR cellhashR Public

    An R package designed to demultiplex cell hashing data

    R 32 9

  4. geneSetVis geneSetVis Public

    gene-set enrichment visualization.

    R 2 1

Repositories

Showing 10 of 14 repositories
  • DiscvrLabKeyModules Public

    A collection of public LabKey modules developed by the Bimber Lab

    BimberLab/DiscvrLabKeyModules's past year of commit activity
    HTML 4 5 9 0 Updated Oct 17, 2026
  • discvr-components Public

    This holds npm packages designed to support DISCVR web applications

    BimberLab/discvr-components's past year of commit activity
    JavaScript 0 Apache-2.0 0 4 1 Updated Oct 17, 2026
  • cellhashR Public

    An R package designed to demultiplex cell hashing data

    BimberLab/cellhashR's past year of commit activity
    R 32 9 0 0 Updated Oct 10, 2026
  • RIRA Public

    The Rhesus Immune Reference Atlas: multi-tissue scRNA-seq atlas and code for cell type/state classification

    BimberLab/RIRA's past year of commit activity
    R 15 3 0 0 Updated Oct 10, 2026
  • DISCVRSeq Public

    A collection of command line tools for working with sequencing data

    BimberLab/DISCVRSeq's past year of commit activity
    HTML 52 Apache-2.0 16 0 0 Updated Sep 21, 2026
  • antigenfinder Public
    BimberLab/antigenfinder's past year of commit activity
    Python 0 MIT 0 0 1 Updated Aug 27, 2026
  • nimble Public

    nimble — execute lightweight, flexible alignments on custom reference libraries

    BimberLab/nimble's past year of commit activity
    Python 3 MIT 0 4 0 Updated Jun 30, 2026
  • nimbleR Public

    Contains helper functions to append nimble data to Seurat objects

    BimberLab/nimbleR's past year of commit activity
    R 1 0 0 0 Updated Apr 14, 2026
  • nimble-aligner Public

    nimble-aligner is the backend for nimble, a tool that executes lightweight, flexible alignments to generate supplemental alignment data

    BimberLab/nimble-aligner's past year of commit activity
    Rust 2 MIT 1 3 0 Updated Jan 16, 2026
  • BimberLab.github.io Public

    Bimber Lab Site

    BimberLab/BimberLab.github.io's past year of commit activity
    1 Apache-2.0 1 0 0 Updated Feb 11, 2025
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