Issues

• Support for Python3.14t

  documentation
  OpenMS/pyopenms-docs#504 · Filter by author yonist opened on Mar 29, 2026
  3

• FeatureFindingMetabo settings

  OpenMS/pyopenms-docs#496 · Filter by author yzzx02 opened on Jan 6, 2026
  1

• Replacement for sphinx-hoverxref not working

  OpenMS/pyopenms-docs#494 · Filter by author jpfeuffer opened on Dec 16, 2025
  2

• Parameter settings

  OpenMS/pyopenms-docs#481 · Filter by author mutoujunX opened on Nov 25, 2025

• 'pyopenms._pyopenms_6.MSChromatogram' object has no attribute 'get_df'

  bug
  OpenMS/pyopenms-docs#458 · Filter by author vdaevoloop opened on Mar 11, 2025
  3

• API docs do not follow the version in conf.py

  critical
  OpenMS/pyopenms-docs#453 · Filter by author jpfeuffer opened on Feb 25, 2025
  2

  

• Nightly pip install instructions install 3.2.0 rather than the latest version.

  bug
  OpenMS/pyopenms-docs#452 · Filter by author jonathan-hunter opened on Jan 23, 2025
  3

• add code snipped on how to filter by native id

  documentation
  OpenMS/pyopenms-docs#441 · Filter by author timosachsenberg opened on Jul 9, 2024
  1

• Extract specific information from feature_map and matched to ConsensusMap

  documentation
  OpenMS/pyopenms-docs#438 · Filter by author chulexuexibiedebushihewo opened on Jun 26, 2024
  1

• Get wrong MassTraceDetection results

  bug
  OpenMS/pyopenms-docs#437 · Filter by author xieyying opened on Jun 16, 2024
  18

  

• add Tutorial on saving a subset of data (zoomed in 2D area)

  documentation
  OpenMS/pyopenms-docs#436 · Filter by author timosachsenberg opened on Jun 6, 2024

• correction charge in mzML file

  documentation
  OpenMS/pyopenms-docs#435 · Filter by author neel-lab opened on May 28, 2024
  2

• An AttributeError: 'pyopenms.pyopenms_1.ConsensusMap' object has no attribute 'get_df'

  OpenMS/pyopenms-docs#422 · Filter by author chulexuexibiedebushihewo opened on Nov 19, 2023
  2

• Add some tutorial on basic OpenSWATH chromatogram algorithms

  documentationsprint candidate
  OpenMS/pyopenms-docs#416 · Filter by author timosachsenberg opened on Nov 3, 2023

• Test notebooks action does not trigger correctly!!

  bugCI/CDcritical
  OpenMS/pyopenms-docs#409 · Filter by author jpfeuffer opened on Aug 22, 2023
  

• Find a way to automatically update versions at release

  CI/CD
  OpenMS/pyopenms-docs#405 · Filter by author jpfeuffer opened on Jul 20, 2023
  2

• Documentation about Ionic mobility

  documentation
  OpenMS/pyopenms-docs#404 · Filter by author PierreSnell opened on Jun 27, 2023
  2

• Translate dataframes functions to cython

  OpenMS/pyopenms-docs#388 · Filter by author jpfeuffer opened on Apr 28, 2023
  2

• Create Vector wrapper for PeptideIdentifications and ProteinIdentifications

  sprint candidate
  OpenMS/pyopenms-docs#387 · Filter by author jpfeuffer opened on Apr 28, 2023
  1

• Potential useful information to review and add to the readthedocs page - from learning unit 11

  sprint candidate
  OpenMS/pyopenms-docs#373 · Filter by author timosachsenberg opened on Mar 9, 2023

• Potential useful information to review and add to the readthedocs page - from learning unit 10

  sprint candidate
  OpenMS/pyopenms-docs#372 · Filter by author timosachsenberg opened on Mar 9, 2023

• Potential useful information to review and add to the readthedocs page - from learning unit 9

  sprint candidate
  OpenMS/pyopenms-docs#371 · Filter by author timosachsenberg opened on Mar 9, 2023
  3

• Potential useful information to review and add to the readthedocs page - from learning unit 7

  sprint candidate
  OpenMS/pyopenms-docs#370 · Filter by author timosachsenberg opened on Mar 9, 2023
  3

• Potential useful information to review and add to the readthedocs page - from learning unit 6

  sprint candidate
  OpenMS/pyopenms-docs#369 · Filter by author timosachsenberg opened on Mar 9, 2023

• Potential useful information to review and add to the readthedocs page - from learning unit 5

  sprint candidate
  OpenMS/pyopenms-docs#368 · Filter by author timosachsenberg opened on Mar 9, 2023
  3