Issues

• Error when no spots detected

  bug
  JaneliaSciComp/multifish#49 · Filter by author krokicki opened on Feb 27, 2024

• Run Bigstream2 in Pipeline

  bug
  JaneliaSciComp/multifish#48 · Filter by author anaste123 opened on Jan 21, 2024
  1

• "RuntimeError: ConnectionPool is closed" when registration

  bug
  JaneliaSciComp/multifish#47 · Filter by author azzhu opened on Nov 27, 2023
  

• Spot extraction error when running pipeline with "lsf" profile

  bug
  JaneliaSciComp/multifish#46 · Filter by author cgoina opened on Oct 2, 2023
  

• Make RS-FISH default

  enhancement
  JaneliaSciComp/multifish#45 · Filter by author krokicki opened on Sep 27, 2023
  2

• Run "warp_spots" only produced nothing

  bug
  JaneliaSciComp/multifish#44 · Filter by author FangmingXie opened on Jul 17, 2023
  1

• Error stitching large sample

  bug
  JaneliaSciComp/multifish#43 · Filter by author FangmingXie opened on Jun 28, 2023
  3

• Skip steps within Stitching

  enhancement
  JaneliaSciComp/multifish#42 · Filter by author FangmingXie opened on Jun 26, 2023
  4

• Generate MVL from CZI if missing

  enhancement
  JaneliaSciComp/multifish#41 · Filter by author krokicki opened on Jun 2, 2023
  1

  

• Add distributed CellPose segmentation

  enhancement
  JaneliaSciComp/multifish#39 · Filter by author krokicki opened on Jun 1, 2023
  

• Integrate BigStream2

  enhancement
  JaneliaSciComp/multifish#38 · Filter by author krokicki opened on Jun 1, 2023
  4

  

• Other data formats as input.

  enhancement
  JaneliaSciComp/multifish#25 · Filter by author kenjp1223 opened on Feb 14, 2023
  1

  

• Add RS-FISH parameters for multiple channels

  enhancement
  JaneliaSciComp/multifish#20 · Filter by author neugun opened on Jul 20, 2022
  3

  

• Automatically adjust segmentation model dir

  enhancement
  JaneliaSciComp/multifish#16 · Filter by author krokicki opened on Mar 23, 2022

• Add segmentation_channels

  enhancement
  JaneliaSciComp/multifish#15 · Filter by author krokicki opened on Mar 22, 2022

• adding ROI and spot extraction in the pipeline

  enhancement
  JaneliaSciComp/multifish#13 · Filter by author limingtan opened on Mar 21, 2022
  

• Delete shared_data_dir contents after publish

  enhancement
  JaneliaSciComp/multifish#12 · Filter by author krokicki opened on Mar 2, 2022
  

• Feature request: add standalone pipeline for segmentation

  enhancement
  JaneliaSciComp/multifish#8 · Filter by author KMSmichelle opened on Feb 4, 2022
  5

• Support for dax file input format

  enhancement
  JaneliaSciComp/multifish#7 · Filter by author pranathivemuri opened on Jan 20, 2022
  3