Issues

• Missing metadata in HDF5 fusion leads to error opening file

  JaneliaSciComp/BigStitcher#167 · Filter by author ScientistRachel opened on Aug 21, 2026

• "Stitching|Multiview Explorer" window is automatically resized to screen width at every mode switch

  JaneliaSciComp/BigStitcher#164 · Filter by author lollopus opened on Feb 3, 2026

• Tile grouping in the BDV 'slide out' side panel is lost when switching between "Multiview" and "Stitching" in the Stitching Explorer

  JaneliaSciComp/BigStitcher#163 · Filter by author lollopus opened on Feb 3, 2026

• Which OME ZARR version is supported?

  JaneliaSciComp/BigStitcher#160 · Filter by author nvladimus opened on Oct 29, 2025

• Support for intensity adjustment with "Closest To Its Tile Center" fusion

  JaneliaSciComp/BigStitcher#159 · Filter by author matham opened on Oct 22, 2025

• Image fusion result translated out of canvas frame

  JaneliaSciComp/BigStitcher#158 · Filter by author Kaltzisp opened on Sep 22, 2025

• Consider not Grouping Tiles by default

  JaneliaSciComp/BigStitcher#157 · Filter by author bogovicj opened on Aug 26, 2025

• Conditional lossy conversion of tiles from 32 to 16 bits during resave as HDF5

  JaneliaSciComp/BigStitcher#155 · Filter by author lollopus opened on Jul 5, 2025

• Missing LoadParseQueryXML

  JaneliaSciComp/BigStitcher#154 · Filter by author snehashis-roy opened on Jun 25, 2025

• Automation analysis

  JaneliaSciComp/BigStitcher#153 · Filter by author simcha-vos-from-tu-delft opened on Apr 8, 2025

• Terminal hangs when running a macro for image fusion headlessly, but not for other macros

  JaneliaSciComp/BigStitcher#150 · Filter by author agustleoa opened on Feb 7, 2025

• Multiview Deconvolution Error

  JaneliaSciComp/BigStitcher#148 · Filter by author swethan139 opened on Jan 15, 2025
  4

• N5 Writer & File Export Challenges

  JaneliaSciComp/BigStitcher#146 · Filter by author kevin-m-dean opened on Dec 20, 2024
  1

• Illegal character error

  JaneliaSciComp/BigStitcher#143 · Filter by author ewestlundicr opened on Nov 11, 2024
  3

• Where is some of the old Multiview reconstruction functionality?

  JaneliaSciComp/BigStitcher#142 · Filter by author Jana-Fuhrmann opened on Nov 8, 2024
  1

• Reading tile locations from file results in duplicate tiles

  JaneliaSciComp/BigStitcher#141 · Filter by author vbrow29 opened on Oct 27, 2024
  1

• toggleable bounding boxes in bdv

  JaneliaSciComp/BigStitcher#140 · Filter by author d-v-b opened on Oct 11, 2024
  1

• Image registration export as tiff

  JaneliaSciComp/BigStitcher#138 · Filter by author sophietheis opened on May 21, 2024

• Interactively reorient sample and apply manual transform not yielding same fused image

  JaneliaSciComp/BigStitcher#137 · Filter by author lacan opened on Apr 23, 2024

• Stitching SPIM artifacts

  JaneliaSciComp/BigStitcher#134 · Filter by author matham opened on Dec 19, 2023
  1

• Pixel spacing defined in fused TIFF images is incorrect

  JaneliaSciComp/BigStitcher#133 · Filter by author kevinwbishop opened on Nov 27, 2023

• Export to tiff saves only one Z step.

  JaneliaSciComp/BigStitcher#131 · Filter by author orena1 opened on Nov 12, 2023
  1

• python cannot exit main function when using bigstitcher batch process marco script

  JaneliaSciComp/BigStitcher#130 · Filter by author lancexiang opened on Sep 11, 2023

• reset view

  JaneliaSciComp/BigStitcher#127 · Filter by author raacampbell opened on May 23, 2023
  3

• Small feature request: parse z-planes in the manual loaders

  JaneliaSciComp/BigStitcher#126 · Filter by author ScientistRachel opened on May 2, 2023
  2