Issues

• Compatibility with scanpy ecosystem in python

  BiocPy/spatialexperiment#61 · Filter by author linjing-lab opened on Apr 15, 2026
  6

• Multiple names for image_data's column: can be either scale_factor or scaleFactor

  BiocPy/spatialexperiment#52 · Filter by author jkanche opened on May 14, 2025

• spelling out methods names

  enhancement
  BiocPy/spatialexperiment#47 · Filter by author jkanche opened on Apr 24, 2025
  

• implement to_anndata()

  BiocPy/spatialexperiment#44 · Filter by author keviny2 opened on Apr 23, 2025
  

• Implement rotate_img() in SpatialExperiment class

  BiocPy/spatialexperiment#43 · Filter by author keviny2 opened on Apr 16, 2025
  2

  

• getters and setters for SpatialImage properties

  BiocPy/spatialexperiment#39 · Filter by author keviny2 opened on Apr 4, 2025

• tidy up printing spatial coords

  BiocPy/spatialexperiment#29 · Filter by author keviny2 opened on Feb 26, 2025

• combine row ops

  BiocPy/spatialexperiment#28 · Filter by author keviny2 opened on Feb 26, 2025

• enable updates to sample_id

  BiocPy/spatialexperiment#25 · Filter by author keviny2 opened on Feb 24, 2025
  1

• SPE-rotate-mirror (methods for spatial attributes)

  BiocPy/spatialexperiment#20 · Filter by author keviny2 opened on Feb 8, 2025

• imgData methods

  BiocPy/spatialexperiment#19 · Filter by author keviny2 opened on Feb 8, 2025

• interop w/ SpatialData

  BiocPy/spatialexperiment#17 · Filter by author keviny2 opened on Feb 4, 2025
  

• function to rename samples

  BiocPy/spatialexperiment#8 · Filter by author keviny2 opened on Jan 27, 2025

• Coercions to/from scverse representations

  BiocPy/spatialexperiment#6 · Filter by author jkanche opened on Jan 23, 2025